So the application says "make sure the transcript doesn't have any photos or logos"... with no indication what to do in the event that it does? Strange
I think the best thing to do is call the university office and ask what to do. If by "due tomorrow" you mean Tuesday, you have plenty of time for that. If you're totally out of time or can't reach them, I suggest covering the picture with a piece of paper and write "picture blocked due to application instructions". Similarly for the logo. Writing that shows you're doing it for the right reason and you're not tampering with the whole transcript. I think that's better than sending it anyway and doing something that was explicitly requested not to do. Though this is just my opinion. I'm just a student.